Publikationen

Preprints

H. Märkle, A. Tellier and S. John (2019) Cross-Species association statistics for genome-wide studies of host and parasite polymorphism data. bioRxiv, DOI: 10.1101/726166

Cécile Lorrain, Alice Feurtey, Mareike Möller, Janine Haueisen, Eva Stukenbrock (2020) Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defences. bioRxiv 2020.05.13.092635. DOI: 10.1101/2020.05.13.092635

Kusch, S., Frantzeskakis, L., Lassen, B. D., Kümmel, F., Pesch, L., Barsoum, M., ... & Panstruga, R. (2021). A fungal plant pathogen overcomes conserved broad-spectrum disease resistance by rapid gene loss. bioRxiv. DOI: 10.1101/2021.12.09.471931

Kusch, S., Singh, M., Thieron, H., Spanu, P., & Panstruga, R. (2022). Site-specific analysis reveals candidate cross-kingdom small RNAs, tRNA and rRNA fragments, and signs of fungal RNA phasing in the barley-powdery mildew interaction. bioRxiv. DOI: 10.1101/2022.07.26.501657

2023

Glaser-Schmitt A, Parsch J (2023) Dynamics and stage-specificity of between-population gene expression divergence in the Drosophila melanogaster larval fat body. PLoS Genet 19(4): e1010730. doi.org/10.1371/journal.pgen.1010730

Eldon, B. (2022). Viability Selection at Linked Sites.DOI: 10.20944/preprints202212.0263.v1

Arnason, E., Koskela, J., Halldorsdottir, K., & Eldon, B. (2022). Sweepstakes reproductive success via pervasive and recurrent selective sweeps. bioRxiv. DOI:10.1101/2022.05.29.493887

2022

Eldon, B., & Stephan, W. (2022). Sweepstakes reproduction facilitates rapid adaptation in highly fecund populations. DOI:10.1111/mec.16903

Retel, C., Kowallik, V., Becks, L., & Feulner, P. G. (2022). Strong selection and high mutation supply characterize experimental Chlorovirus evolution. Virus evolution, 8(1), veac003. DOI: 10.1093/ve/veac003

Le Pennec, G., Retel, C., Kowallik, V., Becks, L., & Feulner, P. (2022). Demographic fluctuations and selection during host-parasite coevolution interactively increase genetic diversity. Authorea Preprints. DOI:10.22541/au.166728606.66386756/v1

Eckert, S., Herden, J., Stift, M., Durka, W., van Kleunen, M., & Joshi, J. (2022). Traces of Genetic but Not Epigenetic Adaptation in the Invasive Goldenrod Solidago canadensis Despite the Absence of Population Structure. Frontiers in Ecology and Evolution, 10. DOI: 10.3389/fevo.2022.856453

Baumdicker, F., Bisschop, G., Goldstein, D., Gower, G., Ragsdale, A. P., Tsambos, G., ... & Kelleher, J. (2022). Efficient ancestry and mutation simulation with msprime 1.0. Genetics, 220(3), iyab229. DOI: 10.1093/genetics/iyab229

Vaghefi, N., Kusch, S., Németh, M. Z., Seress, D., Braun, U., Takamatsu, S., ... & Kiss, L. (2022). Beyond Nuclear Ribosomal DNA Sequences: Evolution, Taxonomy, and Closest Known Saprobic Relatives of Powdery Mildew Fungi (Erysiphaceae) Inferred From Their First Comprehensive Genome-Scale Phylogenetic Analyses. Frontiers in microbiology, 13. DOI: 10.3389/fmicb.2022.903024

Errbii, M., Ernst, U. R., Lajmi, A., Privman, E., Gadau, J., & Schrader, L. (2022). The Pogonomyrmex californicus social niche polymorphism is a polygenic trait involving a young supergene. bioRxiv, 2021-03. DOI: 10.1101/2021.03.21.436260

Goehlich, H., Roth, O., Sieber, M., Chibani, C. M., Poehlein, A., Rajkov, J., ... & Wendling, C. C. (2022). SUB-OPTIMAL ENVIRONMENTAL CONDITIONS PROLONG PHAGE EPIDEMICS IN BACTERIAL POPULATIONS. bioRxiv. DOI: 10.1101/2022.10.28.514181

Wendling, C. C., Lange, J., Liesegang, H., Sieber, M., Pöhlein, A., Bunk, B., ... & Brockhurst, M. A. (2022). Higher phage virulence accelerates the evolution of host resistance. bioRxiv, 2021-03. DOI: 10.1098/rspb.2022.1070

Arnason, E., Koskela, J., Halldorsdottir, K., & Eldon, B. (2022). Sweepstakes reproductive success via pervasive and recurrent selective sweeps. bioRxiv. DOI: https://doi.org/10.1101/2022.05.29.493887

Hashemi, S., Razaghi-Moghadam, Z., Laitinen, R. A., & Nikoloski, Z. (2022). Relative flux trade-offs and optimization of metabolic network functionalities. Computational and structural biotechnology journal, 20, 3963-3971. DOI: 10.1016/j.csbj.2022.07.038

Poloni, A., Garde, R., Dittiger, L. D., Heidrich, T., Müller, C., Drechsler, F., ... & Schirawski, J. (2022). Transcriptome Analysis Reveals Contrasting Plant Responses of Sorghum bicolor upon Colonization by Two Formae Speciales of Sporisorium reilianum. International journal of molecular sciences, 23(16), 8864. DOI: 10.3390/ijms23168864

Kusch, S., Vaghefi, N., Takamatsu, S., Liu, S. Y., Németh, M. Z., Seress, D., ... & Kiss, L. (2022). First Draft Genome Assemblies of Pleochaeta shiraiana and Phyllactinia moricola, Two Tree-Parasitic Powdery Mildew Fungi with Hemiendophytic Mycelia. Phytopathology®, 112(4), 961-967. DOI: 10.1094/PHYTO-08-21-0337-A

Amandine, C., Ebert, D., Stukenbrock, E., de la Vega, R. C. R., Tiffin, P., Croll, D., & Tellier, A. (2022). Unraveling coevolutionary dynamics using ecological genomics. Trends in Genetics. DOI: 10.1016/j.tig.2022.05.008

Bersching, Katharina, et al. (2022) Data-Independent Acquisition (DIA) Is Superior for High Precision Phospho-Peptide Quantification in Magnaporthe oryzae. Journal of Fungi 9.1 DOI: 10.3390/jof9010063

2021

Jacob, Stefan, and Katharina Bersching (2021). Controllable Bypass Suppression in Magnaporthe oryzae Magnaporthe oryzae: Methods and Protocols DOI:10.1007/978-1-0716-1613-0_18

Vendrami, D. L., Peck, L. S., Clark, M. S., Eldon, B., Meredith, M., & Hoffman, J. I. (2021). Sweepstake reproductive success and collective dispersal produce chaotic genetic patchiness in a broadcast spawner. Science advances, 7(37), eabj4713. DOI: 10.1126/sciadv.abj4713

Baumdicker, F., Bisschop, G., Goldstein, D., Gower, G., Ragsdale, A. P., Tsambos, G., ... & Kelleher, J. (2022). Efficient ancestry and mutation simulation with msprime 1.0. Genetics, 220(3), iyab229. DOI:10.1093/genetics/iyab229

Stephan, W. (2021). Rapid evolutionary adaptation in response to selection on quantitative traits. Life, 11(8), 797.DOI: 10.3390/life11080797

Goehlich, H., Sartoris, L., Wagner, K. S., Wendling, C. C., & Roth, O. (2021). Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic plasticity to cope with ancestral salinity levels. Frontiers in Ecology and Evolution, 93. DOI: 10.3389/fevo.2021.626442

Glaser-Schmitt, A., Wittmann, M. J., Ramnarine, T. J., & Parsch, J. (2021). Sexual antagonism, temporally fluctuating selection, and variable dominance affect a regulatory polymorphism in Drosophila melanogaster. Molecular Biology and Evolution, 38(11), 4891-4907. DOI: 10.1093/molbev/msab215

Märkle, H., John, S., Cornille, A., Fields, P. D., & Tellier, A. (2021). Novel genomic approaches to study antagonistic coevolution between hosts and parasites. Molecular Ecology, 30(15), 3660-3676. DOI: 10.1111/mec.16001

Lorrain, C., Feurtey, A., Möller, M., Haueisen, J., & Stukenbrock, E. (2021). Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses. G3, 11(4), jkab068. DOI: 10.1093/g3journal/jkab068

Vidal-Villarejo, M., Freund, F., Hanekamp, H., von Tiedemann, A., & Schmid, K. (2021). Population genomic evidence for a repeated introduction and rapid expansion in Europe of a maize fungal pathogen. bioRxiv, 2020-09. DOI: 10.1101/2020.09.18.303354

Lee, G., Ahmadi, H., Quintana, J., Syllwasschy, L., Janina, N., Preite, V., ... & Krämer, U. (2021). Constitutively enhanced genome integrity maintenance and direct stress mitigation characterize transcriptome of extreme stress‐adapted Arabidopsis halleri. The Plant Journal, 108(4), 896-911. DOI: 10.1111/tpj.15565.

Lindeza, A. S., Barth, K., Kurtz, J., & Zanchi, C. (2021). A Gene Knock-Down Approach in Tribolium castaneum to Study Survival and Priming Towards Bacillus thuringiensis var. tenebrionis. DOI: 10.20944/preprints202101.0531.v2

Eckert, S., Herden, J., Stift, M., Joshi, J., & van Kleunen, M. (2021). Manipulation of cytosine methylation does not remove latitudinal clines in two invasive goldenrod species in Central Europe. Molecular Ecology, 30(1), 222-236. DOI: 10.1111/mec.15722

Kirch, M., Romundset, A., Gilbert, M. T. P., Jones, F. C., & Foote, A. D. (2021). Ancient and modern stickleback genomes reveal the demographic constraints on adaptation. Current Biology, 31(9), 2027-2036. DOI: 10.1016/j.cub.2021.02.027

Errbii, M., Keilwagen, J., Hoff, K. J., Steffen, R., Altmüller, J., Oettler, J., & Schrader, L. (2021). Transposable elements and introgression introduce genetic variation in the invasive ant Cardiocondyla obscurior. Molecular Ecology, 30(23), 6211-6228. DOI: 10.1111/mec.16099

Barsoum, M., Kusch, S., Frantzeskakis, L., Schaffrath, U., & Panstruga, R. (2020). Ultraviolet mutagenesis coupled with next-generation sequencing as a method for functional interrogation of powdery mildew genomes. Molecular Plant-Microbe Interactions, 33(8), 1008-1021. DOI: 10.1094/MPMI-02-20-0035-TA

Schrader, L., Winter, M., Errbii, M., Delabie, J., Oettler, J., & Gadau, J. (2021). Inhibition of HSP90 causes morphological variation in the invasive ant Cardiocondyla obscurior. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 336(4), 333-340. DOI: 10.1002/jez.b.23035

Roberts Kingman, G. A., Vyas, D. N., Jones, F. C., Brady, S. D., Chen, H. I., Reid, K., ... & Veeramah, K. R. (2021). Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution. Science Advances, 7(25), eabg5285. DOI: 10.1126/sciadv.abg5285

Vendrami, D. L., Peck, L. S., Clark, M. S., Eldon, B., Meredith, M., & Hoffman, J. I. (2021). Sweepstake reproductive success and collective dispersal produce chaotic genetic patchiness in a broadcast spawner. Science advances, 7(37), eabj4713. DOI: 10.1126/sciadv.abj4713

2020

Eldon, B. (2020). Evolutionary genomics of high fecundity. Annual Review of Genetics, 54, 213-236. DOI:10.1146/annurev-genet-021920-095932

Zanchi, C., Lindeza, A. S., & Kurtz, J. (2020). Comparative Mortality and Adaptation of a Smurf Assay in Two Species of Tenebrionid Beetles Exposed to Bacillus thuringiensis. Insects, 11(4), 261. DOI: 10.3390/insects11040261

Chibani, C. M., Hertel, R., Hoppert, M., Liesegang, H., & Wendling, C. C. (2020). Closely related vibrio alginolyticus strains encode an identical repertoire of caudovirales-like regions and filamentous phages. Viruses, 12(12), 1359. DOI: 10.3390/v12121359

Tong, H., Küken, A., & Nikoloski, Z. (2020). Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature communications, 11(1), 1-9. DOI: 10.1038/s41467-020-16279-5

Küken, A., Gennermann, K., & Nikoloski, Z. (2020). Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal, 103(6), 2168-2177. DOI: 10.1111/tpj.14890

Chibani, C. M., Roth, O., Liesegang, H., & Wendling, C. C. (2020). Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements. BMC genomics, 21(1), 1-14. DOI: 10.1186/s12864-020-6735-5

Eschenbrenner, C. J., Feurtey, A., & Stukenbrock, E. H. (2020). Population genomics of fungal plant pathogens and the analyses of rapidly evolving genome compartments. In Statistical Population Genomics (pp. 337-355). Humana, New York, NY. DOI: 10.1007/978-1-0716-0199-0

Feurtey, A., Lorrain, C., Croll, D., Eschenbrenner, C., Freitag, M., Habig, M., ... & Stukenbrock, E. H. (2020). Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. BMC genomics, 21(1), 1-15. DOI: 10.1186/s12864-020-06871-w

Frantzeskakis, L., Di Pietro, A., Rep, M., Schirawski, J., Wu, C. H., & Panstruga, R. (2020). Rapid evolution in plant–microbe interactions–a molecular genomics perspective. New Phytologist, 225(3), 1134-1142. DOI:10.1111/nph.15966

De Vries, S., Stukenbrock, E. H., & Rose, L. E. (2020). Rapid evolution in plant–microbe interactions–an evolutionary genomics perspective. new phytologist, 226(5), 1256-1262. DOI: 10.1111/nph.16458

Potgieter, L., Feurtey, A., Dutheil, J. Y., & Stukenbrock, E. H. (2020). On variant discovery in genomes of fungal plant pathogens. Frontiers in microbiology, 11, 626. DOI: 10.3389/fmicb.2020.00626

Märkle, H., & Tellier, A. (2020). Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments. PLoS computational biology, 16(3), e1007668. DOI: 10.1371/journal.pcbi.1007668

Kusch, S., Németh, M. Z., Vaghefi, N., Ibrahim, H. M., Panstruga, R., & Kiss, L. (2020). A short-read genome assembly resource for Leveillula taurica causing powdery mildew disease of sweet pepper (Capsicum annuum). Molecular Plant-Microbe Interactions, 33(6), 782-786. DOI: 10.1094/MPMI-02-20-0029-A

Holze, H., Schrader, L. & Buellesbach, J. (2020) Advances in deciphering the genetic basis of insect cuticular hydrocarbon biosynthesis and variation. Heredity 2020. DOI: 10.1038/s41437-020-00380-y

Alice Feurtey, Cecile Lorrain, Daniel Croll, Christoph Eschenbrenner, Michael Freitag, Michael Habig, Janine Haueisen, Mareike Moller, Klaas Schotanus, Eva Holtgrewe Stukenbrock (2020) Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. BMC Genomics 21, 588. DOI: 10.1186/s12864-020-06871-w

Bjarki Eldon (2020) Evolutionary Genomics of High Fecundity. Annual Review of Genetics Vol. 54:213-236. DOI: 10.1146/annurev-genet-021920-095932

Eckert, S, Herden, J, Stift, M, Joshi, J, van Kleunen, M. (2020) Manipulation of cytosine methylation does not remove latitudinal clines in two invasive goldenrod species in Central Europe. Mol Ecol. 2020; 00: 1– 15. DOI: 10.1111/mec.15722

Stephan, W. and A. Tellier (2020) Stochastic processes and host-parasite coevolution: linking coevolutionary dynamics and DNA polymorphism data. Probabilistic Structures in Evolution (E. Baake and A. Wakolbinger, eds.), European Mathematical Society Series of Congress Reports, in press

Wolfgang Stephan and Sona John (2020) Polygenic Adaptation in a Population of Finite Size. Entropy 2020, 22(8), 907. DOI: 10.3390/e22080907

Frantzeskakis, L., Di Pietro, A., Rep, M., Schirawski, J., Wu, C.‐H. and Panstruga, R. (2020) Rapid evolution in plant–microbe interactions – a molecular genomics perspective. New Phytol. 2020 Feb;225(3):1134-1142. DOI: 10.1111/nph.15966

Dennis, A.B., Ballesteros, G.I., ..., Gadau, J. (2020) Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. BMC Genomics 21, 376. DOI: 10.1186/s12864-020-6764-0

Stefan Kusch, Márk Z. Németh, Niloofar Vaghefi, Heba M. M. Ibrahim, Ralph Panstruga, and Levente Kiss (2020) A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum). Molecular Plant-Microbe Interactions. DOI: 10.1094/MPMI-02-20-0029-A

Zanchi, C., Lindeza, A.S., Kurtz, J. (2020) Comparative Mortality and Adaptation of a Smurf Assay in Two Species of Tenebrionid Beetles Exposed to Bacillus thuringiensis. Insects 11, 261. DOI: 10.3390/insects11040261

H. Märkle, A. Tellier (2020) Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments. PLOS Computational Biology. DOI: 10.1371/journal.pcbi.1007668

Potgieter Lizel, Feurtey Alice, Dutheil Julien Y., Stukenbrock Eva H. (2020) On Variant Discovery in Genomes of Fungal Plant Pathogens. Frontiers in Microbiology 11, 626. DOI: 10.3389/fmicb.2020.00626

Christoph J. Eschenbrenner, Alice Feurtey, and Eva H. Stukenbrock (2020) Population Genomics of Fungal Plant Pathogens and the Analyses of Rapidly Evolving Genome Compartments. Methods in Molecular Biology - Statistical Population Genomics. DOI: 10.1007/978-1-0716-0199-0

Mirna Barsoum, Stefan Kusch, Lamprinos Frantzeskakis, Ulrich Schaffrath, and Ralph Panstruga (2020) UV mutagenesis coupled with next-generation sequencing as a method for functional interrogation of powdery mildew genomes. Molecular Plant-Microbe Interactions. DOI: 10.1094/MPMI-02-20-0035-TA

Chibani, C.M., Roth, O., Liesegang, H. & Wendling, C. (2020) Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements. BMC Genomics 21, 354. DOI: 10.1186/s12864-020-6735-5

Tong, H., Küken, A. & Nikoloski, Z. (2020) Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nat Commun 11, 2410. DOI: 10.1038/s41467-020-16279-5

Sophie de Vries, Eva H. Stukenbrock and Laura E. Rose (2020) Rapid evolution in plant‐microbe interactions ‐ an evolutionary genomics perspective. New Phytologist. DOI: 10.1111/nph.16458

John, S. and W. Stephan (2020) Important role of genetic drift in rapid polygenic adaptation. Ecology and Evolution DOI: 10.1002/ece3.5981

2019

Quentin Foucault, Andreas Wieser, Clara Heumann-Kiesler, Joao Diogo, Berardino Cocchiararo, Carsten Nowak, Ann-Marie Waldvogel, Markus Pfenninger (2019) An experimental assessment of reproductive isolation and its consequences for seasonal hybridization dynamics. Biological Journal of the Linnean Society, Volume 126, Issue 2, February 2019, Pages 327–337. DOI: 10.1093/biolinnean/bly177

Wieser, A., Reuss, F., Niamir, A. et al. (2019) Modelling seasonal dynamics, population stability, and pest control in Aedes japonicus japonicus (Diptera: Culicidae). Parasites Vectors 12, 142. DOI: 10.1186/s13071-019-3366-2

De Cahsan B, Westbury MV, Drews H, Tiedemann R (2019) The complete mitochondrial genome of a European fire-bellied toad (Bombina bombina) from Germany. Mitochondrial DNA Part B: Resources 4, 498-500. DOI: 10.1080/23802359.2018.1547143

Ferro K, Peuß R, Yang W, Rosenstiel P, Schulenburg H, Kurtz J. (2019) Experimental evolution of immunological specificity. Proceedings of the National Academy of Sciences 116. DOI: 10.1073/pnas.1904828116

Schulz NKE, Sell MP, Ferro K, Kleinhölting N, Kurtz J. (2019). Transgenerational Developmental Effects of Immune Priming in the Red Flour Beetle Tribolium castaneum. Frontiers in Physiology 10, No. 98. DOI: 10.3389/fphys.2019.00098

Andreea Dréau, Vrinda Venu, Elena Avdievich, Ludmila Gaspar, Felicity C Jones (2019) Genome-wide recombination map construction from single individuals using linked-read sequencing. Nature communications 10 (1), 1-11. DOI: 10.1038/s41467-019-12210-9

Jukka-Pekka Verta, Felicity C Jones (2019) Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks. Elife 8, e43785. DOI: 10.7554/eLife.43785

Daniel Živković, Sona John, Mélissa Verin, Wolfgang Stephan, Aurélien Tellier (2019) Neutral genomic signatures of host-parasite coevolution. BMC Evol Biol 19, 230. DOI: 10.1186/s12862-019-1556-3

Feurtey, A., D. Stevens, W. Stephan, and E. H. Stukenbrock (2019) Interspecific gene exchange introduces high genetic variability in crop pathogen. Genome Biol. Evol. 11: 3095-3105. DOI: 10.1093/gbe/evz224

Stephan, W. (2019) Selective sweeps. Genetics 211: 5-13. DOI: 10.1534/genetics.118.301319

Pandey, P.K., Yu, J., Omranian, N., Alseekh, S., Vaid, N., Fernie, A.R., Nikoloski, Z. and Laitinen, R.A.E. (2019) Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations. Plant Direct 3, e00186. DOI: 10.1002/pld3.186

Retel, C. Märkle, H., Becks, L. and P. Feulner (2019) Ecological and evolutionary processes shaping viral genetic diversity. Viruses 11(3), 220. DOI: 10.3390/v11030220

Retel, C., Kowallik, V., Huang, W., Werner, B., Künzel, S., Becks, L. and P. Feulner (2019) The feedback between selection and demography shapes genomic diversity during coevolution. Science Advances. Vol. 5, no. 10, eaax0530. DOI: 10.1126/sciadv.aax0530 (shared first and shared last authorship)

Ramnarine, T. J. S., A. Glaser-Schmitt, A. Catalán, and J Parsch (2019) Population genetic and functional analysis of a cis-regulatory polymorphism in the Drosophila melanogaster Metallothionein A gene. Genes (Basel) 10: 147. DOI: 10.3390/genes10020147

Goehlich H, Roth O, Wendling CC. (2019) Filamentous phages reduce bacterialgrowth in low salinities. R. Soc. open sci. 6:191669. DOI: 10.1098/rsos.191669

Jaanus Suurväli, Andrew R Whiteley, Yichen Zheng, Karim Gharbi, Maria Leptin, Thomas Wiehe (2019) The laboratory domestication of zebrafish: from diverse populations to inbred substrains. Molecular Biology and Evolution, msz289. DOI: 10.1093/molbev/msz289

Preite Veronica, Sailer Christian, Syllwasschy Lara, Bray Sian, Ahmadi Hassan, Krämer Ute and Yant Levi (2019) Convergent evolution in Arabidopsis halleri and Arabidopsis arenosa on calamine metalliferous soils. Phil. Trans. R. Soc. B, 374, DOI: 10.1098/rstb.2018.0243

Isabel ML Saur, Saskia Bauer, Barbara Kracher, Xunli Lu, Lamprinos Franzeskakis, Marion C Müller, Björn Sabelleck, Florian Kümmel, Ralph Panstruga, Takaki Maekawa, Paul Schulze-Lefert (2019) Multiple pairs of allelic MLA immunereceptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife, 8:e44471. DOI: 10.7554/eLife.44471

Herden, J, Eckert, S, Stift, M, Joshi, J, van Kleunen, M (2019) No evidence for local adaptation and an epigenetic underpinning in native and non‐native ruderal plant species in Germany. Ecol Evol. 2019; 9: 9412– 9426. DOI: 10.1002/ece3.5325

Mirna Barsoum, Björn Sabelleck, Pietro D. Spanu and Ralph Panstruga (2019) Rumble in the Effector Jungle: Candidate Effector Proteins in Interactions of Plants with Powdery Mildew and Rust Fungi. Critical Reviews in Plant Sciences, 38:4, 255-279, DOI: 10.1080/07352689.2019.1653514

Lamprinos Frantzeskakis, Márk Z. Németh, Mirna Barsoum, Stefan Kusch, Levente Kiss, Susumu Takamatsu, Ralph Panstruga (2019) The Parauncinula polyspora Draft Genome Provides Insights into Patterns of Gene Erosion and Genome Expansion in Powdery Mildew Fungi. mBio Sep 2019, 10 (5) e01692-19, DOI: 10.1128/mBio.01692-19

Stefan Bohnert, Luis Antelo, Christiane Grünewald, Alexander Yemelin, Karsten Andresen and Stefan Jacob (2019) Rapid adaptation of signaling networks in the fungal pathogen Magnaporthe oryzae. BMC Genomics, 20: 736. DOI: 10.1186/s12864-019-6113-3

Philipp H. Schiffer, ... , Thomas Wiehe, Mark Blaxter (2019) Signatures of the evolution of parthenogenesis and cryptobiosis in the genomes of panagrolaimid nematodes. iScience, 22: 587-602. DOI: 10.1016/j.isci.2019.10.039

Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, et al. (2019) Evolthon: A community endeavor to evolve lab evolution. PLoS Biol 17(3): e3000182. DOI: 10.1371/journal.pbio.3000182

Tanita Wein, Nils F. Hülter, Itzhak Mizrahi and Tal Dagan (2019) Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance. Nature Communications, 10: 2595. DOI: 10.1038/s41467-019-10600-7

Grandaubert, J., Dutheil, J.Y. and Stukenbrock, E.H. (2019) The genomic determinants of adaptive evolution in a fungal pathogen. Evolution Letters. DOI: 10.1002/evl3.117

Pennington, H. G., Jones, R., Kwon, S., Bonciani, G., Thieron, H., Chandler, T., Luong, P., Morgan, S., Przydacz, Bozkurt, T. O., Bowden, S., Craze, M., Wallington, E., Garnett, J., Kwaaitaal, M., Panstruga, R., Cota, E. and Spanu, P. D. S. (2019) The fungal ribonuclease-like effector protein CSEP0064/BEC1054 represses plant immunity and interferes with degradation of host ribosomal RNA. PLoS Pathog. 15(3):e1007620. DOI: 10.1371/journal.ppat.1007620

Foucault, Q, Wieser, A, Waldvogel, A‐M, Pfenninger, M. (2019) Establishing laboratory cultures and performing ecological and evolutionary experiments with the emerging model species Chironomus riparius. J Appl Entomol., 00: 1– 9. DOI: 10.1111/jen.12606

2018

Eldon, B., & Freund, F. (2018). Genealogical properties of subsamples in highly fecund populations. Journal of Statistical Physics, 172(1), 175-207. DOI: 10.1007/s10955-018-2013-1

Sánchez-Vallet A., S. Fouché, I. Fudal, F. E. Hartmann, J. L. Soyer, A. Tellier and D. Croll (2018) The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens. Annual Review of Phytopathology, 56: 21-40. DOI: 10.1146/annurev-phyto-080516-035303

Schulz NKE, Wagner CI, Ebeling J, Raddatz G, Diddens-de Buhr MF, Lyko F, Kurtz J. (2018) Dnmt1 has an essential function despite the absence of CpG DNA methylation in the red flour beetle Tribolium castaneum. SCIENTIFIC REPORTS 8. DOI: 10.1038/s41598-018-34701-3

Laitinen, R.A.E. and Nikoloski, Z. (2018) Genetic basis of plasticity in plants. Journal of Experimental Botany 70, 739-745. DOI: 10.1093/jxb/ery404

Glaser-Schmitt, A., A. Zečić, and J. Parsch (2018) Gene regulatory variation in Drosophila melanogaster renal tissue. Genetics 210: 287-301. DOI: 10.1534/genetics.118.301073

Stefan Kusch, Lamprinos Frantzeskakis, Hannah Thieron, Ralph Panstruga (2018) Small RNAs from cereal powdery mildew pathogens may target host plant genes. Fungal Biology, Volume 122, Issue 11:1050-1063. DOI:10.1016/j.funbio.2018.08.008

Lamprinos Frantzeskakis, Stefan Kusch, Ralph Panstruga (2018) The need for speed: compartmentalized genome evolution in filamentous phytopathogens. Molecular Plant Pathology, 20 (1), 3–7. DOI: 10.1111/mpp.12738

Foucault, Q, Wieser, A, Waldvogel, A‐M, Feldmeyer, B, Pfenninger, M. (2018) Rapid adaptation to high temperatures in Chironomus riparius. Ecol Evol., 8: 12780– 12789. DOI: 10.1002/ece3.4706

Alice Feurtey and Eva H. Stukenbrock (2018) Interspecific Gene Exchange as a Driver of Adaptive Evolution in Fungi. Annual Review of Microbiology, 72:1, 377-398. DOI: 10.1146/annurev-micro-090817-062753

Nilam Borah, Emad Albarouki, Jan Schirawski (2018) Comparative methods for molecular determination of host-specificity factors in plant-pathogenic fungi. International Journal of Molecular Sciences, 19: 863.
DOI: 10.3390/ijms19030863

Sophie de Vries, Andreas Kukuk, Janina K. von Dahlen, Anika Schnake, Thorsten Kloesges, Laura E. Rose (2018) Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance. Proc. R. Soc. B 2018 285 20172560. DOI: 10.1098/rspb.2017.2560

Sophie de Vries, Janina K von Dahlen, Anika Schnake, Sarah Ginschel, Barbara Schulz, Laura E Rose (2018) Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes. FEMS Microbiology Ecology, Volume 94, Issue 4, 1 April 2018, fiy037. DOI: 10.1093/femsec/fiy037

Eldon, B and W. Stephan (2018) Evolution of highly fecund haploid populations. Theoret. Popul. Biol. 119: 48-56. DOI: 10.1016/j.tpb.2017.10.002

Frantzeskakis, L., Kracher, B., Kusch, S., Yoshikawa-Maekawa, M., Bauer, S., Pedersen, C., Spanu, P. D., Maekawa, T., Schulze-Lefert, P., and Panstruga, R. (2018) Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. BMC Genomics 19: 381 DOI: 10.1186/s12864-018-4750-6

Frantzeskakis, L., von Dahlen, J.K., Panstruga, R., and Rose, L.E. (2018) Rapid evolution in the tug-of-war between microbes and plants. New Phytologist 219: 12-14. DOI: 10.1111/nph.15220

Glaser-Schmitt A, Parsch J. (2018) Functional characterization of adaptive variation within a cis-regulatory element influencing Drosophila melanogaster growth. PLoS Biol. 16(1):e2004538. DOI: 10.1371/journal.pbio.2004538

Krämer U (2018) Conceptualizing plant systems evolution. Curr Opin Plant Biol. 42: 66-75. DOI: 10.1016/j.pbi.2018.02.008. (Epub ahead of print)

Stukenbrock, E.H. and Dutheil, J.Y. (2018) Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots. Genetics, 208(3):1209-1229. DOI: 10.1534/genetics.117.300502

Thordal-Christensen, H., Birch, P. R. J., Spanu, P. D., and Panstruga, R. (2018) Why did filamentous plant pathogens evolve the potential to secrete hundreds of effectors to enable disease? Molecular Plant Pathology 19: 781-785. DOI: 10.1111/mpp.12649

2017

Chibani CM, Poehlein A, Roth O, Liesegang H, Wendling CC (2017) Draft genome sequence of Vibrio splendidus DSM 19640. Genome Announc 5:e01368-17. DOI: 10.1128/genomeA.01368-17

Sophie de Vries, Janina K. von Dahlen, Constanze Uhlmann, Anika Schnake, Thorsten Kloesges and Laura E. Rose (2017) Signatures of selection and host-adapted gene expression of the Phytophthora infestans RNA silencing suppressor PSR2. Molecular Plant Pathology 18:110-124. DOI: 10.1111/mpp.12465

Ferro K, Ferro D, Corra F, Bakiu R, Santovito G, Kurtz J. (2017) Cu,Zn Superoxide Dismutase Genes in Tribolium castaneum: Evolution, Molecular Characterisation, and Gene Expression during Immune Priming. FRONTIERS IN IMMUNOLOGY 8. DOI: 10.3389/fimmu.2017.01811

Momir Futo, Marie P. Sell, Megan A. M. Kutzer, Joachim Kurtz (2017) Specificity of oral immune priming in the red flour beetle Tribolium castaneum. Biol. Lett. 13: 20170632. DOI: 10.1098/rsbl.2017.0632

Gunter HM, Schneider RF, Karner I, Sturmbauer C, Meyer A (2017) Molecular investigation of genetic assimilation during the rapid adaptive radiations of East African cichlid fishes. Molecular Ecology 26(23):6634-6653. DOI: 10.1111/mec.14405

Kavita Jain, Wolfgang Stephan (2017) Modes of Rapid Polygenic Adaptation. Molecular Biology and Evolution 34(12):3169–3175. DOI: 10.1093/molbev/msx240

Jain, K. and W. Stephan (2017) Rapid adaptation of a polygenic trait after a sudden environmental shift. Genetics 206: 389-406. DOI: 10.1534/genetics.116.196972

Ralf F. Schneider and Axel Meyer (2017) How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations. Molecular Ecology 26:330-350. DOI: 10.1111/mec.13880

Spanu, P. D., Panstruga, R. (2017) Editorial: Biotrophic Plant-Microbe Interactions. Frontiers in Plant Science 8: 192. DOI: 10.3389/fpls.2017.00192

Jaanus Suurväli, Pierre Boudinot, Jean Kanellopoulos, Sirje Rüütel Boudinot (2017) P2X4: A fast and sensitive purinergic receptor. Biomedical Journal 40:245-256. DOI: 10.1016/j.bj.2017.06.010

2016

Grant, W. S., Arnason, E., & Eldon, B. (2016). New DNA coalescent models and old population genetics software. ICES Journal of Marine Science, 73(9), 2178-2180. DOI: 10.1093/icesjms/fsw076

Eldon, B., & Stephan, W. (2018). Evolution of highly fecund haploid populations. Theoretical population biology, 119, 48-56. DOI: 10.1016/j.tpb.2017.10.002

Eldon, B., Riquet, F., Yearsley, J., Jollivet, D., & Broquet, T. (2016). Current hypotheses to explain genetic chaos under the sea. Current zoology, 62(6), 551-566. DOI: 10.1093/cz/zow094

Bindschedler LV, Panstruga R, Spanu PD (2016) Mildew-Omics: How Global Analyses Aid the Understanding of Life and Evolution of Powdery Mildews. Frontiers in Plant Science 7:123. DOI: 10.3389/fpls.2016.00123

Bozicevic, V., S. Hutter, W. Stephan, and A. Wollstein (2016) Population genetic evidence for cold adaptation in European Drosophila melanogaster populations. Mol. Ecol. 25: 1175-1191. DOI: 10.1111/mec.13464

Bjarki Eldon, Florentine Riquet, Jon Yearsley, Didier Jollivet, Thomas Broquet (2016) Current hypotheses to explain genetic chaos under the sea. Current Zoology 62(6):551–566. DOI: 10.1093/cz/zow094

W. Stewart Grant, Einar Árnason, Bjarki Eldon (2016) New DNA coalescent models and old population genetics software. ICES Journal of Marine Science 73(9): 2178–2180. DOI: 10.1093/icesjms/fsw076

Kerstin Howe, Philipp H. Schiffer, Julia Zielinski, Thomas Wiehe, Gavin K. Laird, John C. Marioni, Onuralp Soylemez, Fyodor Kondrashov, Maria Leptin (2016) Structure and evolutionary history of a large family of NLR proteins in the zebrafish. Open Biol. 6: 160009. DOI: 10.1098/rsob.160009

Li J, Du L, Guan W, Yu F-H, van Kleunen M (2016) Latitudinal and longitudinal clines of phenotypic plasticity in the invasive herb Solidago canadensis in China. Oecologia 182:755-764.
DOI: 10.1007/s00442-016-3699-x

Gunther Jansen, Niels Mahrt, Leif Tueffers, Camilo Barbosa, Malte Harjes, Gernot Adolph, Anette Friedrichs, Annegret Krenz-Weinreich, Philip Rosenstiel, Hinrich Schulenburg (2016) Association between clinical antibiotic resistance and susceptibility of Pseudomonas in the cystic fibrosis lung. Evolution, Medicine, and Public Health Volume 2016, Issue 1, January 2016, Pages 182–194. DOI: 10.1093/emph/eow016

Philipp H. Schiffer, Jan Gravemeyer, Martina Rauscher and Thomas Wiehe (2016) Ultra Large Gene Families: A Matter of Adaptation or Genomic Parasites? Life 6: 32. DOI:10.3390/life6030032

Stein RJ, Höreth S, de Melo JR, Syllwasschy L, Lee G, Garbin ML, Clemens S, Krämer U (2016) Relationships between soil and leaf mineral composition are element-specific, environment-dependent and geographically structured in the emerging model Arabidopsis halleri. New Phytologist 213 (3), 1274-1286

Stephan, W. (2016) Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation. Mol. Ecol. 25: 79-88. DOI: 10.1111/mec.13288

Suryawanshi V, Talke IN, Weber M, Eils R, Brors B, Clemens S, Krämer U (2016) Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri. BMC Genomics 17 (Suppl 13):1034

2015

Sophie de Vries, Thorsten Kloesges and Laura E. Rose (2015) Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. Genome Biol Evol. 7:3307-3321. DOI: 10.1093/gbe/evv225

Jain, K. and W. Stephan (2015) Response of polygenic traits under stabilizing selection and mutation when loci have unequal effects. G3-Genes Genomes Genetics 5: 1065-1074. DOI: 10.1534/g3.115.017970